smaht-pipeline-utils
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  • SMaHT Portal Pipeline Utilities
  • Install
  • smaht_pipeline_utils
  • API
  • Contribute a Pipeline
  • Deploy Pipelines to AWS Environment
  • Pipeline’s Repository Structure
  • Portal Objects
    • File Format
    • File Reference
    • Software
    • Workflow
    • Pipeline
smaht-pipeline-utils
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  • Portal Objects
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Portal Objects

  • File Format
    • Template
    • Fields Definition
      • Required
        • name
        • extension
        • description
      • Optional
        • secondary_formats
  • File Reference
    • Template
    • Fields Definition
      • Required
        • name
        • description
        • format
        • version
      • Optional
        • secondary_files
        • status
        • license
        • category
        • type
  • Software
    • Template
    • Fields Definition
      • Required
        • name
        • version
        • commit
        • category
      • Optional
        • source_url
        • description
        • license
  • Workflow
    • Template
    • General Fields Definition
      • Required
        • name
        • description
        • runner
        • category
        • input
        • output
      • Optional
        • software
    • Input Definition
      • argument_type
    • Output Definition
      • argument_type
      • secondary_files
      • argument_to_be_attached_to
  • Pipeline
    • Template
    • General Fields Definition
      • Required
        • name
        • description
        • category
        • input
        • workflows
      • Optional
    • Workflows Definition
      • dependencies
      • shards
      • version
      • input
      • output
      • config
    • Input Definition
      • argument_type
      • files
      • value
      • Linking Fields
        • source
        • source_argument_name
      • Input Dimension Fields
        • scatter
        • gather
        • input_dimension
        • extra_dimension
        • gather_input
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