File Format
This documentation provides a comprehensive guide to the template structure necessary for implementing File Format objects. These objects enable users to codify file formats used by the pipeline.
Template
## File Format information ##################################
# Information for file format
#############################################################
# All the following fields are required
name: <string>
extension: <extension> # fa, fa.fai, dict, ...
description: <string>
# All the following fields are optional and provided as example,
# can be expanded to anything accepted by the schema
# https://github.com/smaht-dac/smaht-portal/tree/main/src/encoded/schemas
secondary_formats:
- <format> # bam, fastq, bwt, ...